Publications, Products & Presentations 

259. Kompella P., Gracia B., Leblanc L., Engelman S., Kulkarni C., Desai N., June V., March S., Pattengale S., Rodriguez-Rivera G., Ryu S., Strohkendle I., Clark G. (2020) Interactive Youth Science Workshops benefit student participants and graduate student mentors. PLOS Biology, 18(3): e3000668.

258. Bhadra S, Riedel T. E., Lakhotia S., Tran, N. D, Ellington A. D. (2020) High-surety isothermal amplification and detection of SARS-CoV-2, including with crude enzymes. BioRxiv.

257. Zamora-Olivares, D., Kaoud, T. S., Zeng, L., Pridgen, J. R., Zhuang, D. L., Ekpo, Y. E., Nye, J. R., Elles, M., Anslyn, E. V.; Dalby, K. N., (2020) Quantification of ERK Kinase Activity in Biological Samples Using Differential Sensing. ACS Chemical Biology 15 (1), 831.

256. Brewster, I. I,, James T., Gregory D. ,Thiabaud, Harvey, P., Zafar, H., Reuther, J. F., Dell'Acqua, S., Johnson, R. M. Root, H. D.,  Metola, P., Jasanoff, A., Casella, L., Sessler, J. L.. (2020) Metallotexaphyrins as MRI-Active Catalytic Antioxidants for Neurodegenerative Disease: A Study on Alzheimer’s Disease. Chem.

255. Boulgakov, A. A., Moor, S., Moor, A., Jo, H. H. Metola, P., Joyce, L. A., Marcotte, E., Welch, C. J. Anslyn, E. A.  (2020) Next-Generation TLC: A Quantitative Platform for Parallel Spotting and Imaging. The Journal of Organic Chemistry.

254. Thomason, J., Padmakumar, A., Sinapov, J., Walker, N., Jiang, Y., Yedidsion, H., Hart, J., Stone P., Mooney, R. (2020) Jointly improving parsing and perception for natural language commands through human-robot dialog. Journal of Artificial Intelligence Research 67, 327-374. 

253. Wallace K. E., Rausch R. T., Ramsey M. E., Cummings M. E. (2020). Sex differences in cognitive performance, style and domain relationships in mosquitofish (Gambusia affinis). Animal Cognition.

252. Bagchi, D. N. , Battenhouse, A. N., Park, D., Iyer, V.R.. (2020). The Histone Variant H2A.Z in Yeast Is Almost Exclusively Incorporated Into the +1 Nucleosome in the Direction of Transcription. Nucleic Acids Research, 48(1).

251. Montgomery, M. H., Hermes, J. J., Winget, D. E., Dunlap, B. H., & Bell, K. J., (2020) Limits on Mode Coherence in Pulsating DA White Dwarfs Due to a Nonstatic Convection Zone, ApJ, 890(1), 11.

250. Vanderbosch, Z., Hermes, J. J., Dennihy, E., Dunlap, B. H., Izquierdo, P., Tremblay, P. E., Cho, P. B., Gaensicke, B. T., Bell, K. J., Montgomery, M. H., & Winget, D. E., (2020) A White Dwarf with Transiting Circumstellar Material Far Outside Its Tidal Disruption Radius. 

249. Schaeuble, M. A., Nagayama, T., Bailey, J. E., Gomez, T. A., Montgomery, M. H., Winget, D. E. (2019) H-beta and H-gamma Absorption-line Profile Inconsistencies in Laboratory Experiments Performed at White Dwarf Photosphere Conditions, ApJ, 885(1), 86.

248. Ramsey M. E., Fry D., Cummings M. E. (2019) Isotocin increases female avoidance of males in a coercive mating system: assessing the social salience theory of oxytocin Human Behavior. 

247. Bell, K. J., Corsico, A. H., Bischoff-Kim, A., Althaus, L. G., Bradley, P. A., Calcaferro, L. M., Montgomery, M. H., Uzundag, M., Baran, A. S., Bognr, Z., Charpinet, S., Ghasemi, H., & Hermes, J. J. (2019) TESS first look at evolved compact pulsators. Asteroseismology of the pulsating helium-atmosphere white dwarf TIC 257459955 A&A, 632, A42.

246. Gutierrez, A. E., Shah, P., Rex, A., Nguyen T., Kenkare, S. P.,  Barrick, J.,  Mishler, D. M. (2019) Bioassay for determining the concentrations of caffeine and individual methylxanthines in complex samples. Applied & Developmental Microbiology 85, 23. 

245. Yedidsion, H., Deans, J., Connor, S., Chillara, M., Hart, J., Stone, P. Mooney, R. Optimal Use of Verbal Instructions for Multi-robot Human Navigation Guidance. In Proceedings of the International Conference on Social Robotics (ICSR). November 26-29, 2019. Madrid, Spain.

244. Shah, R., Jiang, Y., Karnan, H., Briscoe-Martinez, G., Mulder, D., Gupta, R., Schlossman, R. Murphy, M., Hart, J. W.,  Sentis, L., Stone, P. Solving Service Robot Tasks: UT Austin Villa@ Home 2019 Team Report. In Proceedings of the AAAI Fall Symposium on Artificial Intelligence for Human-Robot Interaction (AI-HRI). November 7-9, 2019.

243. Hart, J., Mirsky, R., Tejeda, S., Mahajan, B.,Mahajan, B., Goo, J.,  Baldauf, K., Owen, S., Stone, P. Unclogging Our Arteries: Using Human-Inspired Signals to Disambiguate Navigational Intentions. In Proceedings of the AAAI Fall Symposium on Artificial Intelligence for Human-Robot Interaction (AI-HRI). November 7-9, 2019.

242. Sammons, R. M.; Perry, N. A.; Li, Y.; Cho, E. J.; Piserchio, A.; Zamora-Olivares, D. P.; Ghose, R.; Kaoud, T. S.; Debevec, G.; Bartholomeusz, C.; Gurevich, V. V.; Iverson, T. M.; Giulianotti, M.; Houghten, R. A.; Dalby, K. N. (2019) A Novel Class of Common Docking Domain Inhibitors That Prevent ERK2 Activation and Substrate Phosphorylation. ACS Chemical Biology, 14 (6), 1183-11943.

241. Kaoud, T. S.; Johnson, W. H.; Ebelt, N. D.; Piserchio, A.; Zamora-Olivares, D.; Van Ravenstein, S. X.; Pridgen, J. R.; Edupuganti, R.; Sammons, R.; Cano, M.; Warthaka, M.; Harger, M.; Tavares, C. D. J.; Park, J.; Radwan, M. F.; Ren, P.; *Anslyn, E. V.; Tsai, K. Y.; Ghose, R.; Dalby, K. N., (2019) Modulating multi-functional ERK complexes by covalent targeting of a recruitment site in vivo. Nature Communications, 10 (1), 5232.2.

240. Ghanem, E.; Long, S. R.; Rodenbusch, S. E.; Shear, R. I.; Beckham, J. T.; Procko, K.; DePue, L.; Stevenson, K. J*.; Robertus, J. D.*; Martin, S*. Teaching through Research: Alignment of Core Chemistry Competencies and Skills within a Multidisciplinary Research Framework. Journal of Chemical Education, 95 (2), 248–258.

239. Bhadra, S., Riedel, T. E., Saldaña, M. A., Hegde, S., Pederson, N., Hughes, G. L., & Ellington, A. D. (2018). Direct nucleic acid analysis of mosquitoes for high fidelity species identification and detection of Wolbachia using a cellphone. PLOS Neglected Tropical Diseases.

238. Corwin, L.A.; Runyon, C.R.; Ghanmen, E.; Sandy, M.; Clark, G.; Palmer, G.C.; Reichler, S.; Rodenbusch, S.E*.; Dolan, E*. (2018)  Effects of Discovery, Iteration, and Collaboration in Laboratory Courses on Undergraduates’ Research Career Intentions Fully Mediated by Student Ownership. CBE Life Sciences Education, 17, ar20.

237. Johnson, T. E.,  Lee, J-H., Myler, L. R., Zhou, Y., Mosley, T. J., Yang, S. H. The Biobricks for Molecular Machines FRI Stream, Uprety, N., Kim, J. Paull, T. T. (2018) Homeodomain proteins directly regulate ATM kinase activity, Cell Reports, 24:6.

236. Corwin, L. A., Runyon, C. R., Ghanem, E., Sandy, M., Clark, G., Palmer, G. C., Reichler, S., Rodenbusch, S. E., Dolan, E. L. (2018). Effects of Discovery, Iteration, and Collaboration in Laboratory Courses on Undergraduates’ Research Career Intentions Fully Mediated by Student Ownership. CBE-Life Sciences. 17:2.

235. Barmak, K., Liu, J., Harlan, L., Xiao, P., Duncan, J., & Henkelman, G. (2017). Transformation of topologically close-packed $β$-W to body-centered cubic $α$-W: Comparison of experiments and computations. The Journal of Chemical Physics, 147(15), 152709. 

234. Beckham, J. T., Metola, P., & Strong, L. (2017). Year-long Research Experiences in Drug Discovery May Lead to Positive Outcomes for Transfer Students. FASEB J.

233. Clark, G., Rodenbusch, S., & Roux, S. (2017). Teaching Cell Signaling Through Research: The Freshman Research Initiative at The University of Texas at Austin. FASEB Journal, 31.

232. Clark, G., Rodenbusch, S., & Roux, S. (2017). Middle School Science Educational Outreach Programs: “Present your Ph.D. thesis to a 12-year-old” and “Shadow a scientist.” In American Society for Biochemistry and Molecular Biology. 

231. Connor, E. W., Sandy, M., & Hawkes, C. V. (2017). Microbial Tools in Agriculture Require an Ecological Context: Stress-Dependent Non-Additive Symbiont Interactions. Agronomy Journal, 109(3), 917. 

230. Friesen, C. N., Ramsey, M. E., & Cummings, M. E. (2017). Differential sensitivity to estrogen-induced opsin expression in two poeciliid freshwater fish species. General and Comparative Endocrinology, 246, 200–210. 

229. Ghanem, E., Afsah, S., Fallah, P. N., Lawrence, A., LeBovidge, E., Raghunathan, S., … Anslyn, E. V. (2017). Differentiation and Identification of Cachaça Wood Extracts Using Peptide-Based Receptors and Multivariate Data Analysis. ACS Sensors, 2(5), 641–647. 

228. Ghanem, E., Long, S. R., Rodenbusch, S. E., Shear, R. I., Beckham, J. T., Procko, K., … Simmons, S. L. (2017). Teaching through Research: Alignment of Core Chemistry Competencies and Skills within a Multidisciplinary Research Framework. Journal of Chemical Education, acs.jchemed.7b00294. 

227. Hart, J., Sheikholeslami, S., Gleeson, B., Croft, E., MacLean, K., Ferrie, F. P., … Laurandeau, D. (2017). Developing Robot Assistants with Communicative Cues for Safe, Fluent HRI. Foundations of Trusted Autonomy, 247–270.

226. Hernandez, S. L., Shrestha, S., Beckham, J. T., & Fast, W. L. (2017). Investigation of Possible Inhibitors Against Multidrug-Resistant New Delhi Metallo-Beta Lactamase (NDM-1). FASEB J. 

225. Hernandez, S. L., Shrestha, S., Beckham, J. T., & Fast, W. L. (2017). INVESTIGATION OF POSSIBLE INHIBITORS AGAINST MULTIDRUG-RESISTANT NEW DELHI METALLO-BETA LACTAMASE (NDM-1). National Conference on Undergraduate Research. 

224. Hua, N., & Riedel, T. E. (2017). Analysis of the protective effects of tooth brushing against biofilm-forming bacteria. In SLAS 2017. 

223. Jiang, Y. S., Riedel, T. E., Popoola, J. A., Morrow, B. R., Cai, S., Ellington, A. D., & Bhadra, S. (2017). Portable platform for rapid in-field identification of human fecal pollution in water. Water Research. 

222. Khandelwal, P., Zhang, S., Sinapov, J., Leonetti, M., Thomason, J., Yang, F., … Stone, P. (2017). BWIBots: A platform for bridging the gap between AI and human–robot interaction research. The International Journal of Robotics Research, 36(5–7), 635–659. 

221. Konopka-Postupolska, D., & Clark, G. (2017). Annexins as Overlooked Regulators of Membrane Trafficking in Plant Cells. International Journal of Molecular Sciences, 18(4), 863.

220. Kumar Tripathy, M., Weeraratne, G., Clark, G., & Roux, S. J. (2017). Apyrase inhibitors enhance the ability of diverse fungicides to inhibit the growth of different plant-pathogenic fungi. Molecular Plant Pathology, 18(7), 1012–1023.

219. Laura, L., Beckham, J. T., & Fast, W. L. (2017). Finding Novel Inhibitors of 6- phosphogluconate-dehydrogenase of Leishmania major through Virtual Screening. In Texas Academy of Science. 

218. Laura, L., Makkapati, N., Beckham, J. T., & Fast, W. L. (2017). FINDING NOVEL INHIBITORS OF 6-PHOSPHOGLUCONATE-DEHYDROGENASE OF LEISHMANIA MAJOR THROUGH VIRTUAL SCREENING. In National Conference on Undergraduate Research. 

217. Lloyd, A., Brockman, A., Aguirre, L., Campbell, A., Bean, A., Cantero, A., & Gonzalez, A. (2017). Advances in the MYB–bHLH–WD Repeat (MBW) Pigment Regulatory Model: Addition of a WRKY Factor and Co-option of an Anthocyanin MYB for Betalain Regulation. Plant and Cell Physiology, 58(9), 1431–1441. 

216. Monk, J. W., Leonard, S. P., Brown, C. W., Hammerling, M. J., Mortensen, C., Gutierrez, A. E., … Barrick, J. E. (2017). Rapid and Inexpensive Evaluation of Nonstandard Amino Acid Incorporation in Escherichia coli. ACS Synthetic Biology, 6(1), 45–54.

215. Mozaffari, S., Guchhait, S., & Markert, J. T. (2017). Spin–orbit interaction and Kondo scattering at the PrAlO 3 /SrTiO 3 interface: effects of oxygen content. Journal of Physics: Condensed Matter, 29(39), 395002.  

214. Narvekar, S., Sinapov, J., & Stone, P. (2017). Autonomous task sequencing for customized curriculum design in reinforcement learning. IJCAI International Joint Conference on Artificial Intelligence, (August), 2536–2542.

213. Quan, M. (2017). Discovering Novel Inhibitors for Nacetylneuraminic Acid Synthase in Neisseria meningitidis. In Texas Academy of Science. 

212. Quan, M., Beckham, J. T., & Fast, W. L. (2017). DISCOVERING NOVEL INHIBITORS FOR N-ACETYLNEURAMINIC ACID SYNTHASE IN NEISSERIA MENINGITIDIS. In National Conference on Undergraduate Research. 

211. Reitz, Z. L., Sandy, M., & Butler, A. (2017). Biosynthetic considerations of triscatechol siderophores framed on serine and threonine macrolactone scaffolds. Metallomics, 9(7), 824–839. 

210. Santiago, G., Vijay, C., Jivko, S., & Peter, S. (2017). CC-Log : Drastically Reducing Storage Requirements for Robots Using Classification and Compression. HotStorage. 

209. Shrestha, S., & Hernandez, S. L. (2017). Discovering New Inhibitors against New Delhi Metallo $β$-lactamase (NDM-1) through Virtual Screening. In Texas Academy of Science. 

208. Shrestha, S., Hernandez, S. L., Beckham, J. T., & Fast, W. L. (2017). Discovering New Inhibitors against New Delhi Metallo $β$-lactamase (NDM-1) through Virtual Screening. In National Conference on Undergraduate Research. 

207. Sixta, A., Choate, A., Maeker, J., Bogat, S., Tennant, D., Mozaffari, S., & Markert, J. (2017). Dynamical Nuclear Magnetic Resonance Imaging of Micron-scale Liquids. In APS Physics. 

206. Svetlik, M., Leonetti, M., Sinapov, J., Shah, R., Walker, N., & Stone, P. (2017). Automatic Curriculum Graph Generation for Reinforcement Learning Agents. AAAI Conference on Artificial Intelligence, (1), 2590–2596.

205. Thomason, J., Padmakumar, A., Sinapov, J., Hart, J., Stone, P., & Mooney, R. (2017). Opportunistic Active Learning for Grounding Natural Language Descriptions. In Conference on Robot Learning. 

204. Weber, N. B., Trieu, C., & Beckham, J. T. (2017). High-Throughput Virtual Screening to Identify Novel Inhibitors of 6-Phosphogluconate Dehydrogenase in Plasmodium vivax. FASEB J. 

203. Yu, E. A., Yeom, J., Tutum, C. C., Vouga, E., & Miikkulainen, R. (2017). Evolutionary decomposition for 3D printing. In Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO ’17 (pp. 1272–1279). New York, New York, USA: ACM Press.

202. Zhang, S., Jiang, Y., Sharon, G., & Stone, P. (2017). Multirobot Symbolic Planning under Temporal Uncertainty. In AAMAS ’17 Proceedings of the 16th Conference on Autonomous Agents and MultiAgent Systems (pp. 501–510). International Foundation for Autonomous Agents and Multiagent Systems.

201. Zhang, S., Sinapov, J., Wei, S., & Stone, P. (2017). Robot Behavioral Exploration and Multimodal Perception using POMDPs.

200. Zhou, A., Beckham, J. T., & Fast, W. L. (2017). VIRTUAL DRUG SCREENING FOR NOVEL INHIBITORS OF D-ALANINE LIGASE IN LISTERIA MONOCYTOGENES. In National Conference on Undergraduate Research. 

199. Brockman, A., & Gonzalez, A. (2016). B111 - Effects of the TTG2 Transcription Factor on Proanthocyanidin Pathways. In ABRCMS.

198. Campbell, A., & Gonzalez, A. (2016). B106 - Functional Analysis of Anthocyanin Genes in Beets. In ABRCMS. 

197. Clark, G., Russell, J., Enyeart, P., Gracia, B., Wessel, A., Jarmoskaite, I., … Roux, S. (2016). Science Educational Outreach Programs That Benefit Students and Scientists. PLOS Biology, 14(2), e1002368. 

196. Clark, G., Vanegas, D., Cannon, A., Hage, W., Jankovic, M., Huang, R., … Roux, S. (2016). Using a Self-referencing Biosensor and Kinematics to Assay Physiological Differences in Apyrase Transgenic Roots. In ASPB Plant Biology.

195. Corona, B., Howard, M., Zhang, L., & Henkelman, G. (2016). Computational screening of core@shell nanoparticles for the hydrogen evolution and oxygen reduction reactions. The Journal of Chemical Physics, 145(24), 244708.  

194. Duncan, J., Harjunmaa, A., Terrell, R., Drautz, R., Henkelman, G., & Rogal, J. (2016). Collective Atomic Displacements during Complex Phase Boundary Migration in Solid-Solid Phase Transformations. Physical Review Letters, 116(3), 35701.  

193. Gaudioso, G., Leonetti, M., & Stone, P. (2016). State Aggregation through Reasoning in Answer Set Programming. In Proceedings of the IJCAI Workshop on Autonomous Mobile Service Robots.

192. Gonzalez, A., Brown, M., Hatlestad, G., Akhavan, N., Smith, T., Hembd, A., … Lloyd, A. (2016). TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway. Developmental Biology, 419(1), 54–63. 

191. Hernandez, M. E., & Gonzalez, A. (2016). B107 - Elucidating Possible Roles of PLC in TTG2-dependent Epidermal Cell Fate Pathways in Arabidopsis thaliana. In ABRCMS. 

190. Lee, S., & Stevens, S. W. (2016). Spliceosomal intronogenesis. Proceedings of the National Academy of Sciences, 113(23), 6514–6519. 

189. Roopadarshini, V., Clark, G., & Roux, S. (2016). Ectopic Expression of psntp9, an Apyrase Gene from Pea, Confers Drought Tolerance and Protects Against Osmotic Stress in Arabidopsis. ASPB Plant Biology. 

188. Sixta, A., Bogat, S., Wright, D., Mozaffari, S., Tennant, D., Paster, J., & Markert, J. (2016). Force-Detected Magnetic Resonance Imaging in Micron-Scale Liquids (Vol. 61). 

187. Sunnadeniya, R., Bean, A., Brown, M., Akhavan, N., Hatlestad, G., Gonzalez, A., … Lloyd, A. (2016). Tyrosine Hydroxylation in Betalain Pigment Biosynthesis Is Performed by Cytochrome P450 Enzymes in Beets (Beta vulgaris). PLOS ONE, 11(2), e0149417.

186. Tennant, D. M. (2016). Four wave mixing as a probe of the vacuum. Physical Review D, 93(12), 125032. 

185. Thompson, J., Sinapov, J., Svetlik, M., Stone, P., & Mooney, R. J. (2016). Learning Multi-Modal Grounded Linguistic Semantics by Playing “I Spy.” In Proceedings of the 25th International Joint Conference on Artificial Intelligence (IJCAI-16) (pp. 3477–3483).

184. Zinapov, J., Khante, P., Svetlik, M., & Stone, P. (2016). Learning to order objects using haptic and proprioceptive exploratory behaviors. In IJCAI’16 Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence (pp. 3462–3468). AAAI Press ©2016. 

183. Beckham, J. T., Simmons, S. L., Stovall, G. M., & Farre, J. (2015). The Freshman Research Initiative as a Model for Addressing Shortages and Disparities in STEM Engagement. In Directions for Mathematics Research Experience for Undergraduates (pp. 181–212). WORLD SCIENTIFIC. 

182. Bell, K. J., Hermes, J. J., Bischoff-Kim, A., Moorhead, S. (EXT12), Montgomery, M. H. (RE), Østensen, R., … Winget, D. E. (PI). (2015). KIC 4552982: Outbursts and Asteroseismology from the Longest Pseudo-Continuous Light Curve of a ZZ Ceti. The Astrophysical Journal

181. Boll, J. M., Tucker, A. T., Klein, D. R., Beltran, A. M. (FRI12), Brodbelt, J. S., Davies, B. W., & Trent, M. S. (2015). Reinforcing Lipid A Acylation on the Cell Surface of Acinetobacter baumannii Promotes Cationic Antimicrobial Peptide Resistance and Desiccation Survival. mBio, 6(3), e00478--15.

180. Brown, K. a., Yang, X. (RE), Schipper, D. (FRI09), Hall, J. W., DePue, L. J. (RE), Gnanam, A. J., … Jones, R. A. (PI). (2015). A self-assembling lanthanide molecular nanoparticle for optical imaging. Dalton Trans., 44(6), 2667–2675.

179. Cannon, A., Salmi, M., Clark, G., & Roux, S. J. (PI). (2015). New insights in plant biology gained from research in space. Gravitational and Space Research, 3(2), 3–19.  

178. Clark, G. (RE), Russell, J., Enyeart, P., Graci, B., Wessel, A., Jarmoskaite, I., … Roux, S. J. (PI). (2015). Middle school science educational outreach programs: “Present your Ph.D. thesis to a 12-year-old” and “Shadow a scientist.” PLoS Biology.

177. Des Marais, D. L., Skillern, W. D. (FRI10), & Juenger, T. E. (PI). (2015). Deeply Diverged Alleles in the Arabidopsis AREB1 Transcription Factor Drive Genome-Wide Differences in Transcriptional Response to the Environment. Molecular Biology and Evolution, 32(4), 956–969. 

176. Ghanem, E. (RE), Hopfer, H., Navarro, A. (FRI09), Ritzer, M. (FRI10), Mahmood, L. (FRI12), Fredell, M. (FRI10), … Anslyn, E. V. (PI). (2015). Predicting the Composition of Red Wine Blends Using an Array of Multicomponent Peptide-Based Sensors. Molecules, 20(5), 9170–9182. 

175. Huynh, V., Wei, E., Ellington, A. D., & Stovall, G. M. (2015). Alternative ELISA Using a RNA Aptamer against Calf Intestinal Alkaline Phosphatase. FASEB Journal, 29. 

174. Karpov, I. V. (RE), Johnson, L. M., & Miikkulainen, R. (PI). (2015). Evaluating team behaviors constructed with human-guided machine learning. In Proceedings of the IEEE Conference on Computational Intelligence and Games (CIG-2015) (pp. 1–7). Tainan, Taiwan.

173. Macalpine, P., Depinet, M. (FRI10), & Stone, P. (PI). (2015). UT Austin Villa 2014 : RoboCup 3D Simulation League Champion via Overlapping Layered Learning. In Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence (AAAI-15).

172. Meyer, A. J., Garry, D. J., Hall, B. (RE), Byrom, M. M., McDonald, H. G. (FRI11), Yang, X., … Ellington, A. D. (PI). (2015). Transcription yield of fully 2′-modified RNA can be increased by the addition of thermostabilizing mutations to T7 RNA polymerase mutants. Nucleic Acids Research, gkv734.

171. Montgomery, M. H., Falcon, R. E., Rochau, G. A., Bailey, J. E., Gomez, T. A., Carlson, A. L., … Winget, D. E. (PI). (2015). An experimental platform for creating white dwarf photospheres in the laboratory: Preliminary results. High Energy Density Physics, 17, 168–174.

170. Peterson, M. A., & Rubinstein, Y. A. (2015). Directions for Mathematics Research Experience for Undergraduates. WORLD SCIENTIFIC. 

169. Umali, A. P. (RE), Ghanem, E. (RE), Hopfer, H., Hussain, A. (FRI09), Kao, Y. (FRI09), Zabanal, L. G. (FRI08), … Anslyn, E. V. (PI). (2015). Grape and wine sensory attributes correlate with pattern-based discrimination of Cabernet Sauvignon wines by a peptidic sensor array. Tetrahedron, 71(20), 3095–3099. 

168. Wang, B., Kluwe, C. A., Lungu, O. I., DeKosky, B. J., Kerr, S. A., Johnson, E. L., … Georgiou, G. (2015). Facile Discovery of a Diverse Panel of Anti-Ebola Virus Antibodies by Immune Repertoire Mining. Scientific Reports, 5(1), 13926. 

167. Xiao, P., Duncan, J., Zhang, L., & Henkelman, G. (2015). Ridge-based bias potentials to accelerate molecular dynamics. The Journal of Chemical Physics, 143(24), 244104.

166. Yang, X., Wang, B., Farris, B., Clark, G., & Roux, S. J. (2015). Modulation of Root Skewing in Arabidopsis by Apyrases and Extracellular ATP. Plant and Cell Physiology, 56(11), 2197–2206. 

165. Bedenbaugh, R. S. (FRI11), Hughes, T. G. (FRI09), Piasecki, S. K., Ellington, A. D. (PI), & Stovall, G. M. (RE). (2014). Aptamers in the study of Fibroblast Growth Factor 8b. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (Vol. 247). AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA.

164. Chill, S. T., Welborn, M. (FRI07), Terrell, R., Zhang, L. (RE), Berthet, J.-C., Pedersen, A., … Henkelman, G. (PI). (2014). EON: software for long time simulations of atomic scale systems. Modelling and Simulation in Materials Science and Engineering, 22(5), 55002.

163. Depinet, M. (FRI10), Macalpine, P., & Stone, P. (PI). (2014). Keyframe Sampling , Optimization , and Behavior Integration : Towards Long-Distance Kicking in the RoboCup 3D Simulation League. In Proceedings of the RoboCup International Symposium 2014 (Vol. 2014).

162.  DeSai, C., Stovall, G. M., Ellington, A. D., & Pierce-Shimomura, J. (2014). Inhibiting amyloid precursor protein to prevent neurodegeneration in Down syndrome and Alzheimer’s disease. In UT Longhorn Research Bazaar.

161. Dupre, R. E. (FRI12), Rodenbusch, S. E. (RE), & Stevenson, K. J. (PI). (2014). Catalytic characterization of PdRh dendrimer-encapsulated nanoparticles in the reduction of 4-nitrophenol. In 247th ACS National Meeting. Dallas, TX. 

160. Gutierrez, A., Rodenbusch, S. E., & Stevenson, K. J. (2014). Copper dendrimer-encapsulated nanoparticles as catalysts of the production of nitric oxide. In 247th ACS National Meeting (p. Doc ID 16056). Dallas, TX.

159. Hart, J. W., & Scassellati, B. (2014). Robotic Self-Modeling. In The Computer After Me (pp. 207–218). IMPERIAL COLLEGE PRESS. 

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149. Patrick, R. M., Mayberry, L. K., Choy, G. (RE), Woodard, L. E., Liu, J. S., White, A. (EXTXX), … Browning, K. S. (PI). (2014). Two Arabidopsis Loci Encode Novel Eukaryotic Initiation Factor 4E Isoforms That Are Functionally Distinct from the Conserved Plant Eukaryotic Initiation Factor 4E. PLANT PHYSIOLOGY, 164(4), 1820–1830.

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147. Stovall, G. M. (RE), Bedenbaugh, R. S. (FRI11), Singh, S. (FRI11), Meyer, A. J., Hatala, P. J., Ellington, A. D. (PI), & Hall, B. (RE). (2014). In Vitro Selection Using Modified or Unnatural Nucleotides. In Current Protocols in Nucleic Acid Chemistry (p. 9.6.1--9.6.33). Hoboken, NJ, USA: John Wiley {&} Sons, Inc. 

146. Topper, S. M., Aguilar, S. C., Topper, V. Y., Elbel, E. (FRI07), & Pierce-Shimomura, J. T. (2014). Alcohol disinhibition of behaviors in C. elegans. PLoS ONE, 9(3).

145. Vidal-Gadea, A. G., Topper, S. M., Young, L., Kressin, L., Elbel, E. (FRI07), Brettmann, L. (FRI09), … Pierce-Shimomura, J. T. (2014). Dopamine and serotonin are responsible for locomotor gait transitions in C. elegans. In Annual Meeting of the Society for Integrative and Comparative Biology. Austin, TX.

144. Ward, M. L. (FRI12), Rodenbusch, S. E. (RE), & Stevenson, K. J. (PI). (2014). Evaluating various dendrimer-­encapsulated nanoparticles as catalysts for production of hydrogen gas from sodium borohydride using methyl viologen as a redox indicator. In 247th ACS National Meeting (Vol. 8, p. Doc ID 15867). Dallas, TX.

143. Wei, E. Z., Huynh, V. D. (FRI11), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2014). Novel molecular reporter system using an anti-calf intestinal alkaline phosphatase aptamer. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (Vol. 247). AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA.

142. Xu, J., Tack, D., Hughes, R. A., Ellington, A. D., & Gray, J. J. (2014). Structure-based non-canonical amino acid design to covalently crosslink an antibody–antigen complex. Journal of Structural Biology, 185(2), 215–222.

141. Yang, X. (RE), Li, Z., Wang, S., Huang, S., Schipper, D. (FRI09), & Jones, R. A. (PI). (2014). Self-assembly of NIR luminescent 30-metal drum-like and 12-metal rectangular d–f nanoclusters with long-chain Schiff base ligands. Chem. Commun., 50(98), 15569–15572. 

140. Yang, X. (RE), Schipper, D. (FRI09), Zhang, L., Yang, K., Huang, S., Jiang, J., … Jones, R. A. (PI). (2014). Anion dependent self-assembly of 56-metal Cd–Ln nanoclusters with enhanced near-infrared luminescence properties. Nanoscale, 6(18), 10569. 

139. Carlino, D. (FRI10), Boyles, S. D., & Stone, P. (PI). (2013). Auction-based autonomous intersection management. IEEE Conference on Intelligent Transportation Systems, Proceedings, ITSC, (October), 529–534. 

138. Chen, X., Briggs, N. (FRI08), McLain, J. R., & Ellington, A. D. (PI). (2013). Stacking nonenzymatic circuits for high signal gain. Proceedings of the National Academy of Sciences of the United States of America, 110(14), 5386–5391.

137. Ching, C. (FRI11), Hua, B., Ryman, K., Jordan, J., Procko, K., & Martin, S. F. (2013). Effects of ligand basicity on protein binding and thermodynamics. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (Vol. 245). AMER CHEMICAL SOC 1155 16TH ST, NW, WASHINGTON, DC 20036 USA. 

136. Covert, A. W. (RE), Lenski, R. E., Wilke, C. O. (PI), & Ofria, C. (2013). Experiments on the role of deleterious mutations as stepping stones in adaptive evolution. Proceedings of the National Academy of Sciences of the United States of America, 110(34), E3171--8.

135. Dasari, R., Walther, B., Robinson, D. a., & Stevenson, K. J. (2013). Influence of the redox indicator reaction on single-nanoparticle collisions at mercury- and bismuth-modified pt ultramicroelectrodes. Langmuir, 29, 15100–15106. 

134. Falcon, R. E., Rochau, G. A., Bailey, J. E., Ellis, J. L. (FRI08), Carlson, A. L., Gomez, T. A., … Pille, T. M. (2013). Creating White Dwarf Photospheres in the Laboratory: Strategy for Astrophysics Applications. In 18th European White Dwarf Workshop. Proceedings of a conference held 13-17 August, 2012, at the Pedagogical University of Cracow, Poland. (pp. 1–7).

133. Falcon, R. E., Rochau, G. a, Bailey, J. E., Ellis, J. L. (FRI08), Carlson, A. L., Gomez, T. a, … Nash, T. J. (2013). An experimental platform for creating white dwarf photospheres in the laboratory. High Energy Density Physics, 9(1), 82–90. 

132. Gaddikoppula, M. (FRI12), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2013). Next Generation of Beta-Glucuronidase (GUS) Reporter Assay Using an Aptamer Inhibitor. In Rice Regional Undergraduate Symposium. Houston, TX.

131. Goran, J. M., Favela, C. A., & Stevenson, K. J. (2013). Optimizing the Electrocatalytic Oxidation of NADH at Nitrogen-Doped Carbon Nanotubes. In The 224th Electrochemical Society Meeting (p. 2518).

130. Goran, J. M., Favela, C. A., & Stevenson, K. J. (2013). Electrochemical Oxidation of Dihydronicotinamide Adenine Dinucleotide at Nitrogen-Doped Carbon Nanotube Electrodes. Analytical Chemistry.

129. Huynh, V. D. (FRI11), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2013). Is It a Ligand Switch or a Dipstick Diagnostic Tool? Yes! RNA Aptamer against Calf Intestinal Alkaline Phosphatase. In Rice Regional Undergraduate Symposium. Houston, TX.

128. Jackson, E. L., Ollikainen, N., Covert, A. W. (RE), Kortemme, T., & Wilke, C. O. (PI). (2013). Amino-acid site variability among natural and designed proteins. PeerJ, 1, e211.  

127. Jamali, T. (FRI12), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2013). Anti-FGF8b aptamers for utilization in cancer diagnostics. In Rice Regional Undergraduate Symposium. Houston, TX.

126. Johnson, J. A. (FRI07), Makis, J. J. (FRI07), Marvin, K. A. (RE), Rodenbusch, S. E. (RE), & Stevenson, K. J. (PI). (2013). Size-dependent hydrogenation of p-nitrophenol with Pd nanoparticles synthesized with poly(amido)amine dendrimer templates. Journal of Physical Chemistry C, 117(44), 22644–22651.

125. Jones, R. A. (PI), Schipper, D. (FRI09), Holliday, B. J. (PI), & Yang, X. (RE). (2013). Chemistry of supramolecular self-assembled lanthanide cages. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (Vol. 245). AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA.

124. Kidd, M. R., O’Connell, L. a., Kidd, C. E., Chen, C. W., Fontenot, M. R. (FRI07), Williams, S. J., & Hofmann, H. a. (2013). Female preference for males depends on reproductive physiology in the African cichlid fish Astatotilapia burtoni. General and Comparative Endocrinology, 180(1), 56–63. 

123. Klein, K. (FRI12), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2013). Nucleic acid aptamer selection against fibroblast growth factor 8b for development of diagnostics and therapeutics for cancer. In Rice Regional Undergraduate Symposium.

122. Kumar, R. (FRI10), Zhang, L. (RE), Rodenbusch, S. E. (RE), & Stevenson, K. J. (PI). (2013). Synergistic Catalytic Activity of Palladium-Gold Dendrimer Encapsulated Nanoparticles. In Rice Regional Undergraduate Symposium. Houston, TX.

121. Ledbetter, M. P. (FRI09), Hwang, T. W., Stovall, G. M. (RE), & Ellington, A. D. (PI). (2013). Continuous in vitro evolution of a ribozyme ligase: A model kit for the eveolution of a biomolecule. In 2013 Synthetic Biology Conference. Imperial College, London, England.

120. Ledbetter, M. P. (FRI09), Hwang, T. W., Stovall, G. M. (RE), & Ellington, A. D. (PI). (2013). Continuous In Vitro evolution of a ribozyme ligase: A model experiment for the evolution of a biomolecule. Biochemistry and Molecular Biology Education, 41(6), 433–442. 

119. Long, S. R., Bonizzoni, M., Ray, B. M. (FRI08), & Anslyn, E. V. (PI). (2013). Differentiation of functional groups and biologically relevant anions using AT-PAMAM dendrimers. Supramolecular Chemistry, 25(9–11), 641–649.

118. MacAlpine, P., Barrera, F. (FRI07), & Stone, P. (PI). (2013). Positioning to win: A dynamic role assignment and formation positioning system. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 7500 LNAI, pp. 190–201). 

117. MacAlpine, P., Collins, N., Lopez-mobilia, A. (FRI07), & Stone, P. (PI). (2013). UT Austin Villa: RoboCup 2012 3D simulation league champion. In Proceedings of the RoboCup International Symposium 2012 (RoboCup 2012), (Vol. 7500 LNAI, pp. 77–88). 

116. Mahmood, A. (FRI12), Ly, P. (FRI12), Beckham, A., Jin, S. (FRI10), Procko, K., Clements, J., & Martin, S. F. (2013). Binding thermodynamics of para-substituted phenols to the mouse major urinary protein. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (Vol. 245). AMER CHEMICAL SOC 1155 16TH ST, NW, WASHINGTON, DC 20036 USA.

115. Marvin, K. A. (RE), Thadani, N. N., Atkinson, C. a., Keller, E. L. (FRI09), & Stevenson, K. J. (PI). (2012). Preparation and catalytic evaluation of ruthenium–nickel dendrimer encapsulated nanoparticles via intradendrimer redox displacement of nickel nanoparticles. Chemical Communications, 48(50), 6289. 

114. Nourani, A. (FRI12), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2013). Aptamer selection against Hcp-6 for diagnosis and detection of Burkholderia pseudomallei. In Rice Regional Undergraduate Symposium. Houston, TX.

113. O’Connell, L. a., Fontenot, M. R. (FRI07), & Hofmann, H. a. (2013). Neurochemical profiling of dopaminergic neurons in the forebrain of a cichlid fish, Astatotilapia burtoni. Journal of Chemical Neuroanatomy, 47, 106–115.

112. Obliosca, J., Liu, C., Batson, R., Babin, M., Werner, J., & Yeh, H.-C. (2013). DNA/RNA Detection Using DNA-Templated Few-Atom Silver Nanoclusters. Biosensors, 3(2), 185–200. 

111. Oladoyin, V. (FRI11), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2013). Aptamer Research. In American Medical Student Association (AMSA) Convention. Washington, DC.

110. Pozun, Z. D. (RE), Rodenbusch, S. E. (RE), Keller, E. L. (FRI09), Tran, K. (FRI07), Tang, W. (RE), Stevenson, K. J. (PI), & Henkelman, G. (PI). (2013). A Systematic Investigation of p -Nitrophenol Reduction by Bimetallic Dendrimer Encapsulated Nanoparticles. The Journal of Physical Chemistry C, 117(15), 7598–7604.

109. Yang, X. (RE), Schipper, D. (FRI09), Jones, R. A. (PI), Lytwak, L. a., Holliday, B. J. (PI), & Huang, S. (2013). Anion-Dependent Self-Assembly of Near-Infrared Luminescent 24- and 32-Metal Cd–Ln Complexes with Drum-like Architectures. Journal of the American Chemical Society, 135(23), 8468–8471.

108. Yang, X. (RE), Schipper, D. (FRI09), Liao, A. (FRI08), Stanley, J. M., Jones, R. A. (PI), & Holliday, B. J. (PI). (2013). Anion dependent self-assembly of luminescent Zn–Ln (Eu and Tb) salen complexes. Polyhedron, 52(3), 165–169.  

107. Allen, P. B., Arshad, S. (FRI07), Li, B., Chen, X., & Ellington, A. D. (PI). (2012). DNA circuits as amplifiers for the detection of nucleic acids on a paperfluidic platform. Lab on a Chip, 12(16), 2951. 

106. Au, T. C., Quinlan, M. (RE), & Stone, P. (PI). (2012). Setpoint scheduling for autonomous vehicle controllers. Proceedings - IEEE International Conference on Robotics and Automation, 2055–2060. 

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104. Carlino, D. (FRI10), Depinet, M. (FRI10), Khandelwal, P. (RE), & Stone, P. (PI). (2012). Approximately orchestrated routing and transportation analyzer: Large-scale traffic simulation for autonomous vehicles. IEEE Conference on Intelligent Transportation Systems, Proceedings, ITSC, (September), 334–339. 

103. Chantranupong, L. (FRI07), & Heineman, R. H. (RE). (2012). A common, non-optimal phenotypic endpoint in experimental adaptations of bacteriophage lysis time. BMC Evolutionary Biology, 12(1), 37. 

102. Falcon, R., Rochau, G. A., Bailey, J. E., Ellis, J. L. (FRI08), Carlson, A. L., Gomez, T., … Gomez, M. R. (2012). Developing an Experimental Platform to Create White Dwarf Photospheres in the Laboratory. In American Astronomical Society, AAS Meeting {#}219, {#}238.07.

101. Fok, C. L., Hanna, M., Gee, S. (EXT10), Au, T. C., Stone, P. (PI), Julien, C., & Vishwanath, S. (2012). A platform for evaluating autonomous intersection management policies. In Proceedings - 2012 IEEE/ACM 3rd International Conference on Cyber-Physical Systems, ICCPS 2012 (pp. 87–96). 

100. Gallagher, L. T. (FRI08), Heo, J. S. (FRI09), Lopez, M. A. (FRI08), Ray, B. M. (FRI08), Xiao, J., Umali, A. P. (RE), … Anslyn, E. V. (PI). (2012). Pattern-based discrimination of organic acids and red wine varietals by arrays of synthetic receptors. Supramolecular Chemistry, 24(2), 143–148. 

99. Ilyas, A., Asghar, W., Allen, P. B., Duhon, H. (FRI08), Ellington, A. D. (PI), & Iqbal, S. M. (2012). Electrical detection of cancer biomarker using aptamers with nanogap break-junctions. Nanotechnology, 23(27), 275502.

98. Ivy, M. A., Gallagher, L. T. (FRI08), Ellington, A. D. (PI), & Anslyn, E. V. (PI). (2012). Exploration of plasticizer and plastic explosive detection and differentiation with serum albumin cross-reactive arrays. Chemical Science, 3(6), 1773. 

97. Karpov, I. V. (RE), Johnson, L., Valsalam, V. K. (RE), & Miikkulainen, R. (PI). (2012). Evaluation Methods for Human-Guided Neuroevolution in Games. In 2012 AAAI Fall symposium on Robots that Learn interactively from Human Teachers. Crystal City, VA.

96.  Karpov, I. V. (RE), Schrum, J., & Miikkulainen, R. (PI). (2012). Believable bot navigation via playback of human traces. In P. F. Hingston (Ed.), Believable Bots (pp. 151–170). Berlin, Heidelberg: Springer. 

95. Keller, T. E., Mis, S. D. (FRI09), Jia, K. E. (FRI09), & Wilke, C. O. (PI). (2012). Reduced mRNA secondary-structure stability near the start codon indicates functional genes in prokaryotes. Genome Biology and Evolution, 4(2), 80–88.

94. Khandelwal, P. (RE), & Stone, P. (PI). (2012). A low cost ground truth detection system for RoboCup using the kinect. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7416 LNCS(July), 515–527. 

93. Ledbetter, M. P. (FRI09), Hwang, T. W., Stovall, G. M. (RE), & Ellington, A. D. (PI). (2012). Continuous In Vitro evolution of a ribozyme ligase: A model experiment for the evolution of a biomolecule. In C. Adami, D. M. Bryson, C. Ofria, & R. T. Pennock (Eds.), Artificial Life 13. The MIT Press.

92. Li, W., Cantor, J. R., Yogesha, S. D., Yang, S., Chantranupong, L. (FRI07), Liu, J. Q., … Zhang, Y. (2012). Uncoupling intramolecular processing and substrate hydrolysis in the N-terminal nucleophile hydrolase hASRGL1 by circular permutation. ACS Chemical Biology, 7(11), 1840–1847. 

91. Macalpine, P., Urieli, D., Barrett, S., Kalyanakrishnan, S., Barrera, F. (FRI07), Lopez-mobilia, A. (FRI07), … Stone, P. (PI). (2012). UT Austin Villa 2011: A Champion Agent in the RoboCup 3D Soccer Simulation Competition. In Proceedings of the 11th International Conference on Autonomous Agents and Multiagent Systems (AAMAS). Valencia, Spain.

90. Marvin, K. A. (RE), Johnson, J. A. (FRI07), Rodenbusch, S. E. (RE), Gong, L. (FRI07), Vanden Bout, D. A. (PI), & Stevenson, K. J. (PI). (2012). Spectrophotometric titration of bimetallic metal cation binding in polyamido(amine) dendrimer templates. Analytical Chemistry, 84(11), 5154–5158.

89. McDonald, H. G. (FRI11), Ellington, A. D. (PI), & Stovall, G. M. (RE). (2012). Aptamer Research. In Rice Regional Undergraduate Symposium. Houston, TX.

88. Miikkulainen, R. (PI), Feasley, E., Johnson, L., Karpov, I. V. (RE), Rajagopalan, P., Rawal, A., & Tansey, W. (2012). Multiagent learning through neuroevolution. In J. et al Liu (Ed.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 7311 LNCS, pp. 24–46). Berlin, Heidelberg: Springer.

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85. Provencal, J. L., Montgomery, M. H. (RE), Kanaan, A., Thompson, S. E., Dalessio, J., Shipman, H. L., … Fraga, L. (2012). EMPIRICAL DETERMINATION OF CONVECTION PARAMETERS IN WHITE DWARFS. I. WHOLE EARTH TELESCOPE OBSERVATIONS OF EC14012-1446. The Astrophysical Journal, 751(2), 91. 

84. Romero, P. a, Stone, E. M., Lamb, C., Chantranupong, L. (FRI07), Krause, A., Miklos, A. E., … Georgiou, G. (2012). SCHEMA-Designed Variants of Human Arginase I and II Reveal Sequence Elements Important to Stability and Catalysis. ACS Synthetic Biology, 1(6), 221–228.

83. Schrum, J., Karpov, I. V. (RE), & Miikkulainen, R. (PI). (2012). Humanlike Combat Behavior via Multiobjective Neuroevolution. In P. F. Hingston (Ed.), Believable Bots (pp. 119–150). Berlin, Heidelberg: Springer. 

82. Stone, E. M., Chantranupong, L. (FRI07), Gonzalez, C., O’Neal, J., Rani, M., Vandenberg, C., & Georgiou, G. (2012). Strategies for optimizing the serum persistence of engineered human arginase i for cancer therapy. Journal of Controlled Release, 158(1), 171–179. 

81. Tabor, D. P. (FRI07), Harding, M. E., Ichino, T., & Stanton, J. F. (2012). High-accuracy extrapolated ab initio thermochemistry of the vinyl, allyl, and vinoxy radicals. Journal of Physical Chemistry A, 116(29), 7668–7676. 

80. Terrell, R., Welborn, M. (FRI07), Chill, S. T., & Henkelman, G. (PI). (2012). Database of atomistic reaction mechanisms with application to kinetic Monte Carlo. Journal of Chemical Physics, 137(1), 1–7. 

79. Yang, X. (RE), Chan, C. K. (FRI08), Lam, D. (FRI08), Schipper, D. (FRI09), Stanley, J. M., Chen, X., … Chen, Q. (2012). Anion-dependent construction of two hexanuclear 3d–4f complexes with a flexible Schiff base ligand. Dalton Transactions, 41(37), 11449.

78. Beuermann, K., Buhlmann, J., Diese, J., Dreizler, S., Hessman, F. V, Husser, T.-O., … Winget, K. I. (2011). The giant planet orbiting the cataclysmic binary DP Leonis. Astronomy {&} Astrophysics, 526, A53. 

77. Ciota, A. T., Koch, E. M. (FRI08), Willsey, G. G., Davis, L. J., Jerzak, G. V. S., Ehrbar, D. J., … Kramer, L. D. (2011). Temporal and spatial alterations in mutant swarm size of St. Louis encephalitis virus in mosquito hosts. Infection, Genetics and Evolution, 11(2), 460–468. 

76. Clark, G. (RE), Fraley, D., Steinebrunner, I., Cervantes, A., Onyirimba, J. (FRI06), Liu, A., … Roux, S. J. (PI). (2011). Extracellular nucleotides and apyrases regulate stomatal aperture in Arabidopsis. Plant Physiology, 156(4), 1740–1753. 

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72. Hessman, F. V, Beuermann, K., Dreizler, S., Marsh, T. R., Parsons, S. G., Copperwheat, C. M., … Littlefair, S. P. (2011). The planets around the post-common envelope binary NN Serpentis. In AIP Conference Proceedings (Vol. 1331, pp. 281–286).

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69. O’ Keefe, B. M., Simmons, N. (FRI06), & Martin, S. F. (2011). Facile access to sterically hindered aryl ketones via carbonylative cross-coupling: Application to the total synthesis of luteolin. Tetrahedron, 67(24), 4344–4351. 

68. O’Connell, L. a., Fontenot, M. R. (FRI07), & Hofmann, H. a. (2011). Characterization of the dopaminergic system in the brain of an African cichlid fish, Astatotilapia burtoni. Journal of Comparative Neurology, 519(1), 75–92. 

67. Pozun, Z. D. (RE), Tran, K. (FRI07), Shi, A. (FRI09), Smith, R. H., & Henkelman, G. (PI). (2011). Why silver nanoparticles are effective for olefin/paraffin separations. Journal of Physical Chemistry C, 115(5), 1811–1818.

66. Sahn, J. J., Su, J. Y. (FRI07), & Martin, S. F. (2011). Facile and unified approach to skeletally diverse, privileged scaffolds. Organic Letters, 13(10), 2590–2593. 

65. Schrum, J., Karpov, I. V. (RE), & Miikkulainen, R. (PI). (2011). UT{^}2: Human-like behavior via neuroevolution of combat behavior and replay of human traces. In 2011 IEEE Conference on Computational Intelligence and Games, CIG 2011 (pp. 329–336). 

64. Suspène, R., Aynaud, M.-M., Guétard, D., Henry, M., Eckhoff, G. (FRI06), Marchio, A., … Wain-Hobson, S. (2011). Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism. Proceedings of the National Academy of Sciences of the United States of America, 108(12), 4858–4863. 

63. Umali, A. P. (RE), LeBoeuf, S. E. (FRI06), Newberry, R. W. (FRI07), Kim, S. (FRI07), Tran, L. (FRI08), Rome, W. a. (FRI06), … Anslyn, E. V. (PI). (2011). Discrimination of flavonoids and red wine varietals by arrays of differential peptidic sensors. Chemical Science.

62. Vidal-Gadea, A. G., Topper, S. M., Young, L., Crisp, A., Kressin, L., Elbel, E. (FRI07), … Pierce-Shimomura, J. T. (2011). Caenorhabditis elegans selects distinct crawling and swimming gaits via dopamine and serotonin. Proceedings of the National Academy of Sciences, 108(42), 17504–17509.

61. Welborn, M. (FRI07), Tang, W. (RE), Ryu, J., Petkov, V., & Henkelman, G. (PI). (2011). A combined density functional and x-ray diffraction study of Pt nanoparticle structure. The Journal of Chemical Physics, 135(1), 14503.

60. Yang, X. (RE), Lam, D. (FRI08), Chan, C. K. (FRI08), Stanley, J. M., Jones, R. A. (PI), Holliday, B. J. (PI), & Wong, W.-K. (2011). Construction of 1-D 4f and 3d–4f coordination polymers with flexible Schiff base ligands. Dalton Transactions, 40(38), 9795.  

59. Antoine, K. M., Mortazavi, S. (FRI07), Miller, A. D., & Miller, L. M. (2010). Chemical differences are observed in children’s versus adults’ latent fingerprints as a function of time. Journal of Forensic Sciences, 55(2), 513–518. 

58. Beuermann, K., Hessman, F. V, Dreizler, S., Marsh, T. R., Parsons, S. G., Winget, D. E. (PI), … Hermes, J. J. (2010). Two planets orbiting the recently formed post-common envelope binary NN Serpentis. Astronomy {&} Astrophysics, (15472), 4.

57. Bogle, M. A., Fisher, V. T. (FRI07), & Joseph, A. K. (2010). Instruments and materials. In J. K. Robinson, C. W. Hanke, R. D. Sengelmann, & D. M. Siegel (Eds.), Surgery of the Skin: Procedural Dermatology (2nd ed.). London, UK: Elsevier Mosby.

56. Chan, C. K. (FRI08), Yang, X. (RE), Jones, R. A. (PI), Holliday, B. J. (PI), & Stanley, J. M. (2010). {{}μ-6,6′-Dimethoxy-2,2′-[butane-1,4-diylbis(nitrilomethylidyne)]diphenolato-1:2κ 8 O 6 , O 1 , O 1′ , O 6′ : O 1 , N , N ′, O 1′ {}}tris(nitrato-1κ 2 O , O ′)copper(II)gadolinium(III).  Acta Crystallographica Section E Structure Reports Online, 66(5), m576--m577.

55. Clark, G. (RE), Wu, M., Wat, N. (FRI06), Onyirimba, J. (FRI06), Pham, T. (FRI07), Herz, N. (FRI06), … Roux, S. J. (PI). (2010). Both the stimulation and inhibition of root hair growth induced by extracellular nucleotides in Arabidopsis are mediated by nitric oxide and reactive oxygen species. Plant Molecular Biology, 74(4), 423–435.  

54. Codrea, V., Hayner, M. (FRI08), Hall, B. (RE), Jhaveri, S., & Ellington, A. D. (PI). (2010). In Vitro Selection of RNA Aptamers to a Small Molecule Target. In Current Protocols in Nucleic Acid Chemistry (Vol. 75, pp. 153–155). Hoboken, NJ, USA: John Wiley {&} Sons, Inc. 

53. Eckhoff, G. (FRI06), Codrea, V., Ellington, A. D. (PI), & Chen, X. (2010). Beyond allostery: Catalytic regulation of a deoxyribozyme through an entropy-driven DNA amplifier. Journal of Systems Chemistry, 1(1), 13. 

52. Falcon, R. E., Rochau, G. a., Bailey, J. E., Ellis, J. L. (FRI08), Montgomery, M. H. (RE), Winget, D. E. (PI), … Rauch, T. (2010). Creating White Dwarf Photospheres in the Laboratory. In AIP Conference Proceedings (Vol. 436, pp. 436–439). 

51. Glazer, E. S., Stone, E. M., Kaluarachchi, W. D., Chantranupong, L. (FRI07), Massey, K. L., Georgiou, G., & Curley, S. A. (2010). Bioengineered Human L-Arginase Is Cytotoxic to Hepatocellular and Pancreatic Carcinoma Cells through Induction of Proapoptotic Pathways. Journal of Surgical Research, 158(2), 338–339. 

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47. Hermes, J. J., Mullally, F., Winget, D. E. (PI), Montgomery, M. H. (RE), Miller, G. F. (FRI08), & Ellis, J. L. (FRI08). (2010). A Status Report on a Planet Search Around White Dwarf Stars. American Institute of Physics Conference Series, 1273(2010), 446–449.

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37. Stanley, J. M., Chan, C. K. (FRI08), Yang, X. (RE), Jones, R. A. (PI), & Holliday, B. J. (PI). (2010). Synthesis, X-ray crystal structure and photophysical properties of tris(dibenzoylmethanido)(1,10-phenanthroline)samarium(III). Polyhedron, 29(12), 2511–2515. 

36. Steinmeyer, S. H. (EXT08), Wilke, C. O. (PI), & Pepin, K. M. (2010). Methods of modelling viral disease dynamics across the within- and between-host scales: the impact of virus dose on host population immunity. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1548), 1931–1941. 

35. Stone, E. M., Chantranupong, L. (FRI07), & Georgiou, G. (2010). The second-shell metal ligands of human arginase affect coordination of the nucleophile and substrate. Biochemistry, 49(49), 10582–10588.

34. Stone, E. M., Glazer, E. S., Chantranupong, L. (FRI07), Cherukuri, P., Breece, R. M., Tierney, D. L., … Georgiou, G. (2010). Replacing Mn 2+ with Co 2+ in Human Arginase I Enhances Cytotoxicity toward l -Arginine Auxotrophic Cancer Cell Lines. ACS Chemical Biology, 5(3), 333–342. 

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30. Xie, S., & Walton, S. P. (2010). Development of a dual-aptamer-based multiplex protein biosensor. Biosensors and Bioelectronics, 25(12), 2663–2668.

29. Cantor, J. R., Stone, E. M., Chantranupong, L. (FRI07), & Georgiou, G. (2009). The human asparaginase-like protein 1 hASRGL1 is an Ntn hydrolase with ??-aspartyl peptidase activity. Biochemistry, 48(46), 11026–11031.

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26. Hall, B. (RE), Arshad, S. (FRI07), Seo, K. (FRI07), Bowman, C. (FRI07), Corley, M. (FRI07), Jhaveri, S. D., & Ellington, A. D. (PI). (2009). In Vitro Selection of RNA Aptamers to a Protein Target by Filter Immobilization. In Current Protocols in Molecular Biology (Vol. 88, p. 24.3.1--24.3.27). Hoboken, NJ, USA: John Wiley {&} Sons, Inc.

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24. Hall, B. (RE), Micheletti, J. M. (FRI06), Satya, P. (FRI07), Ogle, K. (FRI07), Pollard, J., & Ellington, A. D. (PI). (2009). Design, Synthesis, and Amplification of DNA Pools for In Vitro Selection. In Current Protocols in Molecular Biology (Vol. Oct, p. 24.2.1--24.2.27). Hoboken, NJ, USA: John Wiley {&} Sons, Inc. 

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18. Steinmeyer, S. H. (EXT08), & Wilke, C. O. (PI). (2009). Lethal mutagenesis in a structured environment. Journal of Theoretical Biology, 261(1), 67–73. 

17. Xie, S., & Walton, S. P. (2009). Application and analysis of structure-switching aptamers for small molecule quantification. Analytica Chimica Acta, 638(2), 213–219.

16. Beeson, P. (RE), Quin, J. O., Gillan, B. (EXT06), Nimmagadda, T. (EXT06), Ristroph, M., Li, D. (EXT06), & Stone, P. (PI). (2008). Multiagent Interactions in Urban Driving. Journal of Physical, 2(1), 15–29. 

15. Gnanam, A. J., Hall, B. (RE), Shen, X. (FRI05), Piasecki, S., Vernados, A. (FRI05), Galyov, E. E., … Brown, K. a. (2008). Development of aptamers specific for potential diagnostic targets in Burkholderia pseudomallei. Transactions of the Royal Society of Tropical Medicine and Hygiene, 102(SUPPL. 1), S55--S57. 

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12. Li, N., Wang, Y. (FRI05), Pothukuchy, A., Syrett, A., Husain, N. (FRI05), Gopalakrisha, S., … Ellington, A. D. (PI). (2008). Aptamers that recognize drug-resistant HIV-1 reverse transcriptase. Nucleic Acids Research, 36(21), 6739–6751. 

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8. Britton, G. L., Islam, A. S., Xuan, Y. (FRI06), & Sathasivan, K. (2007). Procedure to identify and submit cDNA sequences to GenBank. Plant Tissue Culture and Biotechnology, 17(2), 161–172. 

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