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Center for Systems and Synthetic Biology

The Center for Systems and Synthetic Biology (CSSB) brings together UT researchers across a range of disciplines to quantitatively understand and engineer the regulatory networks underlying organismal biology.

Our research interests include:

  • Disease: Developing computer models to better understand a multitude of human diseases and crop traits.
  • Drugs: Discovering drugs based on genetic modules shared between humans and organisms as distant as yeast.
  • Developing diagnostics for resource-limited settings using smart molecular amplifiers.
  • Immunity: Using cutting-edge genome sequence technology to map immune responses.
  • Emerging viruses: Finding methods to predict the emergence of the next threats.
  • Molecular computation:  Developing programmable molecules that contribute to sensors, amplifiers, and organismal operating systems.

Research at the CSSB is focused on the integration of genomics, proteomics, and metabolomics data—offering a more unified view of organisms as integrated networks. Such systems-wide, interdisciplinary approaches allow us to better define the functions of genes, and to accelerate the discovery of new pathways that are critical for various traits and diseases.

Selected projects include: Diagnostics for Developing Markets. Discovering New Disease Genes, Pathways, and Drugs.

HIV/AIDS: An Ongoing Global Pandemic. Two of their contributions to this field are already being translated to public health:

  • Development of a synthetic gene that protects against HIV, which is now under therapeutic development for the treatment of AIDS.
  • Identification of new genes in the human genome that may help define disease progression. These genes are currently part of a large, ongoing HIV/AIDS association study being conducted using HIV/AIDS cohorts.

Emerging Disease: We are currently focusing on influenza, arenaviruses, and Dengue. We are interested in the host genes that make certain species and individuals more prone to infection by these and other viruses.

Baker, Brett J No
Brett J Baker
Associate Professor
Dwight W. and Blanche Faye Reeder Centennial Fellowship in Systematic and Evolutionary Biology (Holder)

Microbial diversity, ecology, and evolution
BARRICK, JEFFREY E
Jeffrey E Barrick
Professor
Benjamin Clayton Centennial Professorship in Biochemistry (Holder)

Microbial experimental evolution and synthetic biology
512-471-3247
MBB 1.436
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Charmichael, Tiffany
Tiffo Carmichael
Graduate Program Manager
512-232-3426
NHB
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CHEN, ZENGJIAN JEFFREY No
Z J Chen
Professor
D. J. Sibley Centennial Professorship in Plant Molecular Genetics (Holder)

Genomics and Epigenetics of Polyploidy and Hybrid Vigor
512-475-9327
NMS 3.122
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DAVIES, BRYAN W
Bryan W Davies
Professor
Lorene Morrow Kelley Professorship in Microbiology (Holder)

We investigate protein-based antibiotics and bacteria-host interactions.
512-471-5535
NMS 3.118
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EHRLICH, LAUREN I
Lauren I Ehrlich
Professor
L. Leon Campbell, Ph.D. Distinguished Professorship in Microbiology (Holder)

Thymocyte: stromal cell interactions in T cell development and T-ALL
512-471-7080
NMS 2.314
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ELLINGTON, ANDREW Yes
Andrew Ellington
Professor
Wilson M. and Kathryn Fraser Research Professorship in Biochemistry (Holder)

512-232-3424
MBB 3.424
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FINKELSTEIN, ILYA J Yes
Ilya J Finkelstein
Associate Professor
Discovery & Biophysical Studies of Molecular Machines
512-471-1394
MBB 3.422
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GEORGIOU, GEORGE
George Georgiou
Professor
Dula D. Cockrell Centennial Chair in Engineering #2 (Holder)

512-471-6975
NMS 1.118
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Gray, Ryan No
Ryan S Gray
Associate Professor, Associate Professor of Pediatrics
Katherine Ross Richards Centennial Teaching Fellowship in Nutrition (Holder)

We study the development cell biology and genetics regulating spine development and disorders.
512-495-5052
HLB
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Hall, Amelia Weber
Amelia W Hall

I am a 5th year graduate student in the Iyer lab. At present, I study epigenetic regulation in brain cancer.
IYER, VISHWANATH R
Vishy Iyer
Professor, Professor of Oncology
512-232-7833
MBB 3.212A
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KIM, JONGHWAN No
Jonghwan Kim
Professor
D. J. Sibley Centennial Professorship in Plant Molecular Genetics (Fellow)

Transcriptional and epigenetic regulations in Pluripotent stem cells and trophoblast lineage development
512-232-8045
NMS 4.314
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Lu, Yi Yes
Yi Lu
Professor
Richard J. V. Johnson - Welch Regents Chair in Chemistry (Holder)

512-471-1542
WEL 4.244
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Manning, Schonna No
MARCOTTE, EDWARD M
Edward M Marcotte
Professor, Affiliated Faculty, Oden Institute
Mr. and Mrs. Corbin J. Robertson, Sr. Regents Chair in Molecular Biology #1 (Holder)

512-232-3919
POB
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MATOUSCHEK, ANDREAS No
Andreas Matouschek
Associate Dean, Professor
Mechanisms of protein machines, protein folding, unfolding, and degradation.
512-232-4045
WCH
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Maynard, Jennifer
Jennifer A Maynard
Professor
Z. D. Bonner Professorship of Chemical Engineering (Holder)

512-471-9188
CPE 5.466
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Ochman, Howard No
Howard Ochman
Professor
Joseph J. & Jeanne M. Lagowski Regents Professorship in Molecular Bioscience (Holder)

512-232-5666
NMS
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Provost, Sean
Sean Provost
Systems Administrator and Desktop Support Specialist
512-232-2632
MBB 3.106
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Qiao, Hong No
Hong Qiao
Associate Professor
Soloveichik, David Yes
David Soloveichik
Associate Professor
Temple Foundation Endowed Faculty Fellowship No. 4 (Holder)

Dynamic DNA nanotechnology; chemical and unconventional computation.
SULLIVAN, CHRISTOPHER S
Christopher S Sullivan
Professor
Lorene Morrow Kelley Professorship in Microbiology (Fellow) | Lorene Morrow Kelley Endowed Faculty Fellowship Fund (Holder)

Our lab seeks to understand how viruses interact with the host non-coding RNA machineries to replicate, induce tumors, and cause pathogenesi
512-471-4648
NMS 3.110
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Taylor, David
David W Taylor Jr
Associate Professor
Marvin L. Hackert Professorship in Biochemistry and Structural Biology (Fellow)

Directly visualizing molecular machines
512-471-9156
NHB 4.121
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WALLINGFORD, JOHN B Yes
John B Wallingford
Professor
Mr. and Mrs. Robert P. Doherty, Jr. Regents Chair in Molecular Biology (Holder)

We combine in vivo imaging with systems biology to explore the cell biological basis of embryonic development
512-232-2784
PAT 222
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WILKE, CLAUS O No
Claus O Wilke
Professor
Jane and Roland Blumberg Centennial Professorship in Molecular Evolution (Holder)

Computational evolutionary biology, Molecular evolution, Virus evolution.
512-232-2459
MBB 3.232
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