In a broad sense, I am interested to understand local adaptation of natural population across different climate and edaphic cline. Specifically, I am interested to study gene expression divergence and how cis-regulation can play a key role on evolution of gene expression.

Haque T, Bhaskara GB, Yin J, Bonnette J, Juenger TE Natural variation in growth and leaf
ion homeostasis in response to salinity stress in Panicum hallii. Accepted for Frontiers in
Plant Science. https://doi.org/10.3389/fpls.2022.1019169

Haque T*, Elias SM*, Razzaque S*, Biswas S, Khan SF, Jewel GMNA, Rahman MS, Juenger
TE, Seraj ZI (2020) Natural variation in growth and physiology under salt stress in rice:
QTL mapping in a Horkuch × IR29 mapping population at seedling and reproductive
stages. Accepted for Scientific Reports. https://doi.org/10.1038/s41598-022-21737-9

Weng X, Haque T, Zhang L, Razzaque S, Lovell JT, Palacio-Mejía JD, Duberney P, Lloyd-
Reilley J, Bonnette J, Juenger TE A pleiotropic flowering time QTL exhibits gene-by-
environmental interaction for fitness in a perennial grass Accepted for Molecular Biology and Evolution. doi: https://doi.org/10.1101/2022.02.26.482116

Bhaskara GB, Lasky JR, Razzaque S, Zhang L, Haque T, Bonnette J, Civelek GZ, Verslues PE,
Juenger TE Natural variation identifies new effectors of water use efficiency in Arabidopsis
Proceedings of the National Academy of Sciences 119:33 (2022), e2205305119.
https://doi.org/10.1073/pnas.2205305119

Lovell JT*, MacQueen AH*, Mamidi S*, Bonnette J*, Jenkins J*, Napier JD, Sreedasyam A,
Session A, Shu S, Barry K, Auer C, Bonos S, Boston L, Chapman J, Daum C, Deshpande S,
Ewing A, Grabowski P, Haque T, Harrison M, Healey A, Jiang J, Kudrna D, Lipzen A,
Pendergast IV TH, Plott C, Qi P, Shakirov E, Sims D, Stewart A, Singan V, Tang Y, Thibivillier
S, Webber J, Weng X, Williams M, Wu A, Yoshinaga Y, Zane M, Zhang L1, Zhang J, Boe
AR, Fay PA, Fritschi FB, Lloyd-Reilley J, Mitchell RB, Rouquette Jr FM, Ronald P, Saha M,
Tobias C, Udvardi M, Wing R, Wu Y, Bartley LE, Casler M, Devos KM, Lowry DB, Rokhsar
D, Grimwood J, Juenger TE, Schmutz J Genomic mechanisms of climate adaptation in
polyploid bioenergy switchgrass Nature 590:7846 (2021). https://doi.org/10.1038/s41586-020-
03127-1

Palacio-Mejía JD, Grabowski PP, Ortiz EM, Silva-Arias GA, Haque T, Marais DLD, Bonnette
J, Lowry DB, Juenger TE, Geographic patterns of genomic diversity and structure in the
C4 grass Panicum hallii across its natural distribution, AoB PLANTS 13:2 ( 2021)
https://doi.org/10.1093/aobpla/plab002

Razzaque S*, Elias SM*, Haque T*, Biswas S, Jewel GMNA, Rahman S, Weng X, Ismail AM,
Walia H, Juenger TE, Seraj ZI (2019) Gene Expression analysis associated with salt stress in
a reciprocally crossed rice population. Scientific Reports 9: 8249.
https://doi.org/10.1038/s41598-019-44757-4

Weng X, Lovell JT, Schwartz SL, Cheng C, Haque T, Zhang L, Razzaque S, Juenger TE (2019)
Complex interactions between day length and diurnal patterns of gene expression drive
photoperiodic responses in a perennial C4 grass. Plant, Cell & Environment 42: 2165-2182.
https://doi.org/10.1111/pce.13546

Razzaque S*, Haque T*, Elias SM*, Rahman MS, Biswas S, Schwartz S, Ismail AM, Walia H,
Juenger TE, Seraj ZI (2017) Reproductive stage physiological and transcriptional responses
to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible
(IR29) rice. Scientific Reports 7: 46138. https://doi.org/10.1038/srep46138

Islam MS, Saito JA, Emdad EM, Ahmed B, Islam MM, Halim A, Hossen QMM, Hossain MZ,
Ahmed R, Hossain MS, Kabir SMT, Khan MSA, Khan MM, Hasan R, Aktar N, Honi U, Islam
R, Rashid MM, Wan X, Hou S, Haque T, Azam MS, Moosa MM, Elias SM, Hasan AMM,
Mahmood N, Shafiuddin M, Shahid S, Shommu NS, Jahan S, Roy S, Chowdhury A, Akhand AI,
Nisho GM, Uddin KS, Rabeya T, Hoque SME, Snigdha AR, Mortoza S, Matin SA, Islam MK,
Lashkar MZH, Zaman M, Yuryev A, Uddin MK, Rahman MS, Haque MS, Alam MM, Khan H,
Alam M (2017) Comparative genomics of two jute species and insight into fibre biogenesis.
Nature Plants 3: 16223). https://doi.org/10.1038/nplants.2016.223

Amin USM, Biswas S, Elias SM, Razzaque S, Haque T, Malo R, Seraj ZI (2016) Enhanced
Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice Vacuolar Na+/H+
Antiporter Gene Compared to 1.9 kb Coding Region with 5′ UTR in Transgenic Lines of
Rice. Frontiers in Plant Science 7: 14. https://doi.org/10.3389/fpls.2016.00014

Parvin S, Biswas S, Razzaque S, Haque T, Elias SM, Tammi RS, Seraj ZI (2015) Salinity and
drought tolerance conferred by in planta transformation of SNAC1 transcription factor
into a high-yielding rice variety of Bangladesh. Acta Physiologiae Plantarum 37: 68.
https://doi.org/10.1007/s11738-015-1817-8

Biswas S, Razzaque S, Elias SM, Amin USM, Haque T, Islam SMT, Lisa LA, Naznin F, Rasul
NM, Seraj ZI (2014) Effect of the vacuolar Na+/H+ antiporter transgene in a rice landrace
and a commercial rice cultivar after its insertion by crossing. Acta Physiologiae Plantarum
37: 1730. https://doi.org/10.1007/s11738-014-1730-6

Yesmin N, Elias SM, Rahman MS, Haque T, Mahbub Hasan AKM, Seraj ZI (2014) Unique
Genotypic Differences Discovered among Indigenous Bangladeshi Rice Landraces.
International Journal of Genomics 2014: 210328. https://doi.org/10.1155/2014/210328
* Authors contribute equally